PTSDgene database

SNP Report

Basic Info
Name rs2273816 dbSNP Ensembl
Location 13:49719920 - 49719920(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.130192
Annotation intron_variant
Variant Effect intron_variant(ENST00000261667)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000261667)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000261667)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Morris, C. P.,2012 PTSD Allele: X2=2.297, P-value=0.130, OR=1.47, 95%CI:...... Allele: X2=2.297, P-value=0.130, OR=1.47, 95%CI: 0.86-2.48. Genotype: P-value=0.074 More... The rs2273816 SNP was found to be not associated with PTSD. The rs2273816 SNP was found to be not associated with PTSD. Non-significant

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
KPNA3 karyopherin alpha 3 13q14.3 1(0/1/0)

SNPs in LD with rs2273816 (count: 20)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 20)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx