SNP Report
Basic Info
| Name | rs2273816 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 13:49719920 - 49719920(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.130192 | ||
| Annotation | intron_variant | ||
| Variant Effect | intron_variant(ENST00000261667) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000261667) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000261667) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Strong transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Morris, C. P.,2012 | PTSD | Allele: X2=2.297, P-value=0.130, OR=1.47, 95%CI:...... Allele: X2=2.297, P-value=0.130, OR=1.47, 95%CI: 0.86-2.48. Genotype: P-value=0.074 More... | The rs2273816 SNP was found to be not associated with PTSD. The rs2273816 SNP was found to be not associated with PTSD. | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| KPNA3 | karyopherin alpha 3 | 13q14.3 | 1(0/1/0) |
SNPs in LD with rs2273816 (count: 20)
Literature-origin SNPs (count: 0)
LD-proxies (count: 20)
SNP related eQTL (count: 1)