SNP Report
Basic Info
| Name | rs201252087 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 3:114142742 - 114142742(+) | ||
| Variant Seq | G | ||
| Ancestral Allele | A | ||
| Ref Seq | A | ||
| Annotation | intron_variant | ||
| Variant Effect | intron_variant(ENST00000467632, ENST00000460779, ENST00000295881, ENST00000383673) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000467632, ENST00000295881, ENST00000383673, ENST00000460779) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000467632, ENST00000295881, ENST00000383673, ENST00000460779) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Wolf, E. J.,2014 | PTSD diagnosis | In discovery sample: OR=0.6447, uncorrected P-value= 0.0009...... In discovery sample: OR=0.6447, uncorrected P-value= 0.0009, correct P-value=0.013. In discovery male subsample: OR= 0.60, uncorrected P-value= 0.003, corrected P-value= 0.04. In discovery female subsample: OR= 0.59, uncorrected P-value= 0.03, corrected P-value= 0.23. More... | The SNP showed nominal evidence of association with lifetime...... The SNP showed nominal evidence of association with lifetime PTSD, withstood correction for multiple testing, result was unchanged when we controlled for total trauma exposure. In men showed nominally significant associations with PTSD and withstood correction for multiple testing. Not significantly associated with PTSD in women, not on the SNP array used in the replication sample. More... | Significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| DRD3 | dopamine receptor D3 | 3q13.3 | 2(1/1/0) |
SNPs in LD with rs201252087 (count: 0)
SNP related eQTL (count: 1)