PTSDgene database

SNP Report

Basic Info
Name rs1962262 dbSNP Ensembl
Location 11:113423457 - 113423457(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.226837
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000542616); intron_variant(ENST00000543292, ENST00000362072, ENST00000542968, ENST00000540600, ENST00000535984, ENST00000544518, ENST00000346454, ENST00000538967); non_coding_transcript_variant(ENST00000540600, ENST00000535984)
SIFT Annotation tolerated_-_low_confidence; tolerated
SIFT Variant Effect tolerated_-_low_confidence(ENST00000362072, ENST00000542968, ENST00000544518); tolerated(ENST00000346454, ENST00000543292, ENST00000538967)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000362072, ENST00000346454, ENST00000543292, ENST00000542968, ENST00000544518, ENST00000538967)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD2 dopamine receptor D2 11q23.2 18(11/7/0)

SNPs in LD with rs1962262 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
SKA2 Yes Adipose Subcutaneous cis GTEx