PTSDgene database

SNP Report

Basic Info
Name rs1799836 dbSNP Ensembl
Location X:43768752 - 43768752(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.456689
Annotation intron_variant
Variant Effect intron_variant(ENST00000378069)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000378069)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000378069)
rSNP? No Link in rVarBase
Related Regulatory Elements N.A.
Chromatin State N.A.
No. of Marker's Association Results 2 (Positive: 1; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 2)
Reference Phenotype Statistical Values Author Comments Marker's Category
Svob Strac, D.,2016 PTSD symptom severity X2=6.176, df=2, P-value=0.046 X2=6.176, df=2, P-value=0.046 A marginally significant association was found between MAOB ...... A marginally significant association was found between MAOB rs1799836 polymorphism and severity of PTSD symptoms. More... Significant
Svob Strac, D.,2016 PTSD symptoms U=6530.0, P-value=0.336 U=6530.0, P-value=0.336 Carriers of G or A allele of MAOB rs1799836 did not differ i...... Carriers of G or A allele of MAOB rs1799836 did not differ in their total CAPS scores. More... Non-significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MAOB monoamine oxidase B Xp11.4-p11.3 3(1/2/0)

SNPs in LD with rs1799836 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx