SNP Report
Name | rs17723231 dbSNP Ensembl | ||
---|---|---|---|
Location | 7:31067832 - 31067832(+) | ||
Variant Seq | T | ||
Ancestral Allele | C | ||
Ref Seq | C | ||
Minor Allele Frequence | 0.1875 | ||
Annotation | intron_variant | ||
Variant Effect | intron_variant(ENST00000614107, ENST00000431811, ENST00000396211, ENST00000409489, ENST00000304166, ENST00000409363) | ||
SIFT Annotation | tolerated | ||
SIFT Variant Effect | tolerated(ENST00000614107, ENST00000409489, ENST00000409363, ENST00000304166, ENST00000396211, ENST00000431811) | ||
PolyPhen Annotation | possibly_damaging; probably_damaging | ||
PolyPhen Variant Effect | possibly_damaging(ENST00000409363); probably_damaging(ENST00000614107, ENST00000409489, ENST00000304166, ENST00000396211, ENST00000431811) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription;Strong transcription;Genic enhancers | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.