PTSDgene database

SNP Report

Basic Info
Name rs3779247 dbSNP Ensembl
Location 7:31061090 - 31061090(+)
Variant Seq G
Ancestral Allele G
Ref Seq C
Minor Allele Frequence 0.226837
Annotation upstream_gene_variant; intron_variant
Variant Effect upstream_gene_variant(ENST00000409489, ENST00000396211); intron_variant(ENST00000409363, ENST00000614107, ENST00000304166, ENST00000431811)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000326139, ENST00000409904)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000326139, ENST00000409904)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Enhancers;Weak transcription;Active TSS
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ADCYAP1R1 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I 7p14.3 19(8/11/0)

SNPs in LD with rs3779247 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx