SNP Report
Name | rs17551315 dbSNP Ensembl | ||
---|---|---|---|
Location | 5:168376005 - 168376005(+) | ||
Variant Seq | C | ||
Ancestral Allele | T | ||
Ref Seq | T | ||
Minor Allele Frequence | 0.0329473 | ||
Annotation | intron_variant; non_coding_transcript_variant | ||
Variant Effect | intron_variant(ENST00000393895, ENST00000523043, ENST00000521089, ENST00000519859, ENST00000265293); non_coding_transcript_variant(ENST00000523043, ENST00000519859) | ||
SIFT Annotation | deleterious | ||
SIFT Variant Effect | deleterious(ENST00000521089, ENST00000265293) | ||
PolyPhen Annotation | probably_damaging | ||
PolyPhen Variant Effect | probably_damaging(ENST00000521089, ENST00000265293) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription | ||
No. of Marker's Association Results | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.