SNP Report
Name | rs159572 dbSNP Ensembl | ||
---|---|---|---|
Location | 5:56211219 - 56211219(+) | ||
Variant Seq | C | ||
Ancestral Allele | C | ||
Ref Seq | A | ||
Minor Allele Frequence | 0.484026 | ||
Annotation | intron_variant; non_coding_transcript_variant | ||
Variant Effect | intron_variant(ENST00000504958, ENST00000519114, ENST00000341048, ENST00000513241); non_coding_transcript_variant(ENST00000519114) | ||
SIFT Annotation | tolerated | ||
SIFT Variant Effect | tolerated(ENST00000504958, ENST00000513241, ENST00000341048) | ||
PolyPhen Annotation | probably_damaging | ||
PolyPhen Variant Effect | probably_damaging(ENST00000504958, ENST00000513241, ENST00000341048) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Enhancers;Flanking Active TSS | ||
No. of Marker's Association Results | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.