SNP Report
Basic Info
| Name | rs152313 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 5:56232440 - 56232440(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | A | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.423722 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000519114, ENST00000513241, ENST00000504958, ENST00000341048); non_coding_transcript_variant(ENST00000519114) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000341048, ENST00000504958) | ||
| PolyPhen Annotation | benign; possibly_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000504958); possibly_damaging(ENST00000341048) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Active TSS;Enhancers | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| ANKRD55 | ankyrin repeat domain 55 | 5q11.2 | 1(1/0/0) |
SNPs in LD with rs152313 (count: 0)
SNP related eQTL (count: 1)