PTSDgene database

SNP Report

Basic Info
Name rs1464896 dbSNP Ensembl
Location 11:27956903 - 27956903(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.153954
Annotation upstream_gene_variant
SIFT Annotation tolerated_-_low_confidence
SIFT Variant Effect tolerated_-_low_confidence(ENST00000395986)
PolyPhen Annotation unknown
PolyPhen Variant Effect unknown(ENST00000395986)
rSNP? No Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Inactive region
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Solovieff, N.,2014 PTSD severity P-value=0.062 P-value=0.062 Achieved nominal levels of significance with PTSD severity, ...... Achieved nominal levels of significance with PTSD severity, although was not significant after correction for multiple testing More... Non-significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
BDNF brain-derived neurotrophic factor 11p14.1 19(4/15/0)

SNPs in LD with rs1464896 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx