SNP Report
Basic Info
| Name | rs13113036 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 4:34133916 - 34133916(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | A | ||
| Ref Seq | A | ||
| Minor Allele Frequence | 0.234026 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000514877, ENST00000513843); non_coding_transcript_variant(ENST00000514877, ENST00000513843) | ||
| SIFT Annotation | deleterious; tolerated | ||
| SIFT Variant Effect | deleterious(ENST00000621961); tolerated(ENST00000511884) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000511884, ENST00000621961) | ||
| rSNP? | No Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Inactive region | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Almli, L. M.,2015 | PTSD Symptoms as measured by the quantitave CAPS scores | In (SBPBC cohort) discovery stage: (sex and top three princ...... In (SBPBC cohort) discovery stage: (sex and top three principal components as covariates) B (SE)=23.19 (4.92), P-value=5.75E-06. More... | None None | Trend |
SNP related genes (count: 0)
SNPs in LD with rs13113036 (count: 223)
Literature-origin SNPs (count: 0)
LD-proxies (count: 223)
SNP related eQTL (count: 1)