PTSDgene database

SNP Report

Basic Info
Name rs12911602 dbSNP Ensembl
Location 15:78599107 - 78599107(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.310104
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect downstream_gene_variant(ENST00000558903, ENST00000624172, ENST00000299565); upstream_gene_variant(ENST00000559002); intron_variant(ENST00000326828, ENST00000559658, ENST00000348639); NMD_transcript_variant(ENST00000559658)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000559658, ENST00000348639, ENST00000326828)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000559658, ENST00000348639, ENST00000326828)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CHRNA3 cholinergic receptor, nicotinic alpha 3 15q24 1(0/1/0)
CHRNA5 cholinergic receptor, nicotinic alpha 5 15q24 2(1/1/0)

SNPs in LD with rs12911602 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx