PTSDgene database

SNP Report

Basic Info
Name rs12029329 dbSNP Ensembl
Location 1:46414184 - 46414184(+)
Variant Seq G
Ancestral Allele G
Ref Seq C
Minor Allele Frequence 0.294329
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000243167, ENST00000484697, ENST00000493735, ENST00000493636, ENST00000489366)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000243167)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000243167)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
FAAH fatty acid amide hydrolase 1p35-p34 8(3/5/0)

SNPs in LD with rs12029329 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx