PTSDgene database

SNP Report

Basic Info
Name rs11637635 dbSNP Ensembl
Location 15:78584808 - 78584808(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.254593
Annotation downstream_gene_variant; intron_variant
Variant Effect downstream_gene_variant(ENST00000567141); intron_variant(ENST00000299565, ENST00000559554, ENST00000394802)
SIFT Annotation tolerated_-_low_confidence; deleterious_-_low_confidence; tolerated
SIFT Variant Effect tolerated_-_low_confidence(ENST00000559554); deleterious_-_low_confidence(ENST00000394802); tolerated(ENST00000559576)
PolyPhen Annotation unknown; benign
PolyPhen Variant Effect unknown(ENST00000559554); benign(ENST00000394802, ENST00000559576)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CHRNA3 cholinergic receptor, nicotinic alpha 3 15q24 1(0/1/0)
CHRNA5 cholinergic receptor, nicotinic alpha 5 15q24 2(1/1/0)

SNPs in LD with rs11637635 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx