SNP Report
Basic Info
| Name | rs11564751 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 5:1447108 - 1447108(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | T | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.057 | ||
| Annotation | upstream_gene_variant | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription, Bivalent Enhancer, Enhancers | ||
| No. of Marker's Association Results | 2 (Positive: 0; Negative: 2; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Solovieff, N.,2014 | PTSD diagnosis | P-value=0.056 P-value=0.056 | Achieved nominal levels of significance with PTSD diagnosis,...... Achieved nominal levels of significance with PTSD diagnosis, although was not significant after correction for multiple testing More... | Non-significant |
| Solovieff, N.,2014 | PTSD severity | P-value=0.009 P-value=0.009 | Achieved nominal levels of significance with PTSD severity, ...... Achieved nominal levels of significance with PTSD severity, although was not significant after correction for multiple testing More... | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| SLC6A3 | solute carrier family 6 (neurotransmitter transporter), member 3 | 5p15.3 | 21(11/10/0) |
SNPs in LD with rs11564751 (count: 6)
Literature-origin SNPs (count: 0)
LD-proxies (count: 6)
SNP related eQTL (count: 1)