PTSDgene database

SNP Report

Basic Info
Name rs11564751 dbSNP Ensembl
Location 5:1447108 - 1447108(+)
Variant Seq A
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.057
Annotation upstream_gene_variant
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription, Bivalent Enhancer, Enhancers
No. of Marker's Association Results 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 2)
Reference Phenotype Statistical Values Author Comments Marker's Category
Solovieff, N.,2014 PTSD diagnosis P-value=0.056 P-value=0.056 Achieved nominal levels of significance with PTSD diagnosis,...... Achieved nominal levels of significance with PTSD diagnosis, although was not significant after correction for multiple testing More... Non-significant
Solovieff, N.,2014 PTSD severity P-value=0.009 P-value=0.009 Achieved nominal levels of significance with PTSD severity, ...... Achieved nominal levels of significance with PTSD severity, although was not significant after correction for multiple testing More... Non-significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 5p15.3 21(11/10/0)

SNPs in LD with rs11564751 (count: 6)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx