SNP Report

Basic Info
Name |
rs115028822
dbSNP
Ensembl
|
Location |
6:158141992 - 158141992(+) |
Variant Seq |
A |
Ancestral Allele |
C |
Ref Seq |
C |
Minor Allele Frequence |
0.0377396 |
Annotation |
downstream_gene_variant; intron_variant; NMD_transcript_variant
|
Variant Effect |
downstream_gene_variant(ENST00000607000); intron_variant(ENST00000607071, ENST00000606965, ENST00000367101, ENST00000607742, ENST00000367104); NMD_transcript_variant(ENST00000607071, ENST00000606965, ENST00000607742)
|
SIFT Annotation |
tolerated
|
SIFT Variant Effect |
tolerated(ENST00000367104, ENST00000606965, ENST00000607000, ENST00000367101)
|
PolyPhen Annotation |
benign
|
PolyPhen Variant Effect |
benign(ENST00000367104, ENST00000606965, ENST00000607000, ENST00000367101)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
Chromatin interactive region
|
Chromatin State |
Weak transcription;Strong transcription
|
No. of Marker's Association Results |
1 (Positive: 0; Negative: 0; Trend: 1) |
Source |
Literature |

SNP related association results

SNP related genes (count: 1)

SNPs in LD with rs115028822 (count: 0)

SNP related eQTL (count: 1)