SNP Report
Basic Info
| Name | rs11071587 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 15:61141344 - 61141344(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.329673 | ||
| Annotation | intron_variant; NMD_transcript_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000551975, ENST00000557822, ENST00000559145, ENST00000560300, ENST00000335670, ENST00000561093); NMD_transcript_variant(ENST00000551975); non_coding_transcript_variant(ENST00000557822, ENST00000559145, ENST00000560300, ENST00000561093) | ||
| SIFT Annotation | deleterious_-_low_confidence; tolerated | ||
| SIFT Variant Effect | deleterious_-_low_confidence(ENST00000551975); tolerated(ENST00000335670) | ||
| PolyPhen Annotation | benign; possibly_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000335670); possibly_damaging(ENST00000551975) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Logue, M. W.,2013 | PTSD | In the VA-African-American sample: OR=4.03, Nominal P-value...... In the VA-African-American sample: OR=4.03, Nominal P-value=0.00011, Adjusted P-value=0.029. More... | It was found to be nominally significantly associated with P...... It was found to be nominally significantly associated with PTSD in the VA-African-American sample. More... | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| RORA | RAR related orphan receptor A | 15q21-q22 | 6(4/2/0) |
SNPs in LD with rs11071587 (count: 0)
SNP related eQTL (count: 1)