PTSDgene database

SNP Report

Basic Info
Name rs10845847 dbSNP Ensembl
Location 12:13867803 - 13867803(+)
Variant Seq C
Ancestral Allele C
Ref Seq A
Minor Allele Frequence 0.348043
Annotation intron_variant
Variant Effect intron_variant(ENST00000630791, ENST00000609686, ENST00000627535)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000609686)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000609686)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Nelson, E. C.,2014 PTSD P-value=0.017, OR=0.84 P-value=0.017, OR=0.84 Although the association of this SNP is of considerably lowe...... Although the association of this SNP is of considerably lower magnitude, it is interesting to note. More... Non-significant

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 12p13.1 1(0/1/0)

SNPs in LD with rs10845847 (count: 5)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx