SNP Report
Basic Info
| Name | rs10845847 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 12:13867803 - 13867803(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | C | ||
| Ref Seq | A | ||
| Minor Allele Frequence | 0.348043 | ||
| Annotation | intron_variant | ||
| Variant Effect | intron_variant(ENST00000630791, ENST00000609686, ENST00000627535) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000609686) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000609686) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Nelson, E. C.,2014 | PTSD | P-value=0.017, OR=0.84 P-value=0.017, OR=0.84 | Although the association of this SNP is of considerably lowe...... Although the association of this SNP is of considerably lower magnitude, it is interesting to note. More... | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| GRIN2B | glutamate receptor, ionotropic, N-methyl D-aspartate 2B | 12p13.1 | 1(0/1/0) |
SNPs in LD with rs10845847 (count: 5)
Literature-origin SNPs (count: 0)
LD-proxies (count: 5)
SNP related eQTL (count: 1)