PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs1079598 dbSNP Ensembl
Location	11:113425552 - 113425552(+)
Variant Seq	G
Ancestral Allele	A
Ref Seq	A
Minor Allele Frequence	0.227835
Annotation	upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect	upstream_gene_variant(ENST00000542968, ENST00000544518, ENST00000535984, ENST00000538967); intron_variant(ENST00000346454, ENST00000540600, ENST00000543292, ENST00000362072, ENST00000542616); non_coding_transcript_variant(ENST00000540600)
SIFT Annotation	tolerated_-_low_confidence; tolerated
SIFT Variant Effect	tolerated_-_low_confidence(ENST00000362072, ENST00000542968, ENST00000544518); tolerated(ENST00000346454, ENST00000543292, ENST00000538967)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000362072, ENST00000346454, ENST00000543292, ENST00000542968, ENST00000544518, ENST00000538967)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
DRD2	dopamine receptor D2	11q23.2	18(11/7/0)

SNPs in LD with rs1079598 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
SKA2	Yes	Adipose Subcutaneous	cis	GTEx