PTSDgene database

SNP Report

Basic Info
Name rs1079597 dbSNP Ensembl
Location 11:113425564 - 113425564(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.250799
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000544518, ENST00000538967, ENST00000535984, ENST00000542968); intron_variant(ENST00000543292, ENST00000542616, ENST00000362072, ENST00000346454, ENST00000540600); non_coding_transcript_variant(ENST00000540600)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000346454, ENST00000542968, ENST00000362072, ENST00000538967, ENST00000544518, ENST00000543292)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000346454, ENST00000542968, ENST00000362072, ENST00000538967, ENST00000544518, ENST00000543292)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD2 dopamine receptor D2 11q23.2 18(11/7/0)

SNPs in LD with rs1079597 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
SKA2 Yes Adipose Subcutaneous cis GTEx