PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs1079597 dbSNP Ensembl
Location	11:113425564 - 113425564(+)
Variant Seq	T
Ancestral Allele	C
Ref Seq	C
Minor Allele Frequence	0.250799
Annotation	upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect	upstream_gene_variant(ENST00000544518, ENST00000538967, ENST00000535984, ENST00000542968); intron_variant(ENST00000543292, ENST00000542616, ENST00000362072, ENST00000346454, ENST00000540600); non_coding_transcript_variant(ENST00000540600)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000346454, ENST00000542968, ENST00000362072, ENST00000538967, ENST00000544518, ENST00000543292)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000346454, ENST00000542968, ENST00000362072, ENST00000538967, ENST00000544518, ENST00000543292)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
DRD2	dopamine receptor D2	11q23.2	18(11/7/0)

SNPs in LD with rs1079597 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
SKA2	Yes	Adipose Subcutaneous	cis	GTEx