PTSDgene database

SNP Report

Basic Info
Name rs1079596 dbSNP Ensembl
Location 11:113425897 - 113425897(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.264177
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000538967, ENST00000535984, ENST00000542968, ENST00000544518); intron_variant(ENST00000543292, ENST00000542616, ENST00000362072, ENST00000540600, ENST00000346454); non_coding_transcript_variant(ENST00000540600)
SIFT Annotation tolerated_-_low_confidence
SIFT Variant Effect tolerated_-_low_confidence(ENST00000362072, ENST00000544518, ENST00000346454, ENST00000542968, ENST00000543292, ENST00000538967)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000362072, ENST00000544518, ENST00000346454, ENST00000542968, ENST00000543292, ENST00000542616); possibly_damaging(ENST00000538967)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD2 dopamine receptor D2 11q23.2 18(11/7/0)

SNPs in LD with rs1079596 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
SKA2 Yes Adipose Subcutaneous cis GTEx