SNP Report
Basic Info
| Name | rs10762479 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 10:51897888 - 51897888(+) | ||
| Variant Seq | G | ||
| Ancestral Allele | G | ||
| Ref Seq | A | ||
| Minor Allele Frequence | 0.306909 | ||
| Annotation | intron_variant | ||
| Variant Effect | intron_variant(ENST00000401604, ENST00000373980, ENST00000373985, ENST00000373976) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000373980, ENST00000401604, ENST00000373985, ENST00000373976) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000373980, ENST00000401604, ENST00000373985, ENST00000373976) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Enhancers;Weak transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Ashley-Koch, A. E.,2015 | Current PTSD | In meta-analysis: main effect P-value=1.60E-05. In meta-analysis: main effect P-value=1.60E-05. |
This SNP was nominally significant with current PTSD after m......
This SNP was nominally significant with current PTSD after mete-analysis of NHB and NHW subset (P-value |
Trend |
G*E study related association result (count: 2)
| Reference | Phenotype | Environment | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|---|
| Ashley-Koch, A. E.,2015 | Current PTSD | Childhood trauma | Logistic regression (additive genetic model) in NHB subset: ...... Logistic regression (additive genetic model) in NHB subset: snp and child trauma interaction P-value=0.037; in NHW subset: snp and child trauma interaction P-value=0.94. More... | Among the NHB, we observed nominally significant interaction...... Among the NHB, we observed nominally significant interactions with childhood trauma for PRKG1. More... | Non-significant |
| Ashley-Koch, A. E.,2015 | Current PTSD | NTE (number of traumatic events) | Logistic regression (additive genetic model) in NHB subset: ...... Logistic regression (additive genetic model) in NHB subset: snp and total trauma interaction P-value=0.61; in NHW subset: snp and total trauma interaction P-value=0.29. More... | We haven't observed significant evidence for gene*environmen...... We haven't observed significant evidence for gene*environment interactions of this snp with total trauma. More... | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| PRKG1 | protein kinase, cGMP-dependent, type I | 10q11.2 | 1(0/0/1) |
SNPs in LD with rs10762479 (count: 0)
SNP related eQTL (count: 1)