SNP Report
Basic Info
| Name | rs1076153 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 9:133633021 - 133633021(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.352835 | ||
| Annotation | non_coding_transcript_exon_variant; upstream_gene_variant; non_coding_transcript_variant | ||
| Variant Effect | non_coding_transcript_exon_variant(ENST00000564021); upstream_gene_variant(ENST00000263611, ENST00000393056); non_coding_transcript_variant(ENST00000564021) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000356873, ENST00000496132) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000356873, ENST00000496132) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | TF binding region;lncRNA | ||
| Chromatin State | Enhancers;Weak transcription;Bivalent Enhancer | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Solovieff, N.,2014 | PTSD severity | P-value=0.154 P-value=0.154 | Achieved nominal levels of significance with PTSD severity, ...... Achieved nominal levels of significance with PTSD severity, although was not significant after correction for multiple testing More... | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| DBH | dopamine beta-hydroxylase (dopamine beta-monooxygenase) | 9q34 | 4(0/4/0) |
SNPs in LD with rs1076153 (count: 2)
Literature-origin SNPs (count: 0)
LD-proxies (count: 2)
SNP related eQTL (count: 1)