SNP Report
Basic Info
| Name | rs10241138 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 7:31056747 - 31056747(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | T | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.185903 | ||
| Annotation | upstream_gene_variant; intron_variant | ||
| Variant Effect | upstream_gene_variant(ENST00000431811); intron_variant(ENST00000409363, ENST00000304166, ENST00000614107) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000326139, ENST00000409904) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000326139, ENST00000409904) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | TF binding region;Chromatin interactive region | ||
| Chromatin State | Enhancers;Weak transcription;Active TSS;Bivalent Enhancer | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Ressler, K. J.,2011 | PTSD diagnosis | Females: P-value=0.948, males: P-value=0.883 Females: P-value=0.948, males: P-value=0.883 | No significant result in females or males after multiple cor...... No significant result in females or males after multiple corrections. More... | Non-significant |
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| GHRHR | growth hormone releasing hormone receptor | 7p14 | rSNP target |
| ADCYAP1R1 | adenylate cyclase activating polypeptide 1 (pituitary) receptor type I | 7p14.3 | 19(8/11/0) |
SNPs in LD with rs10241138 (count: 0)
SNP related eQTL (count: 1)