SNP Report
Name | rs10170218 dbSNP Ensembl | ||
---|---|---|---|
Location | 2:187949717 - 187949717(+) | ||
Variant Seq | C | ||
Ancestral Allele | A | ||
Ref Seq | A | ||
Minor Allele Frequence | 0.276158 | ||
Annotation | intron_variant; non_coding_transcript_variant | ||
Variant Effect | intron_variant(ENST00000434418); non_coding_transcript_variant(ENST00000434418) | ||
SIFT Annotation | tolerated | ||
SIFT Variant Effect | tolerated(ENST00000339091, ENST00000421427, ENST00000392365, ENST00000409676, ENST00000437725, ENST00000420747, ENST00000233156, ENST00000453013, ENST00000426055, ENST00000417013, ENST00000435414) | ||
PolyPhen Annotation | benign; possibly_damaging | ||
PolyPhen Variant Effect | benign(ENST00000421427, ENST00000392365, ENST00000437725, ENST00000420747, ENST00000233156, ENST00000453013, ENST00000426055, ENST00000417013, ENST00000435414); possibly_damaging(ENST00000339091, ENST00000409676) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription | ||
No. of Marker's Association Results | 2 (Positive: 1; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.