PTSDgene database

SNP Report

Basic Info
Name rs9545302 dbSNP Ensembl
Location 13:80027976 - 80027976(+)
Variant Seq C
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.476637
Annotation non_coding_transcript_exon_variant; non_coding_transcript_variant
Variant Effect non_coding_transcript_exon_variant(ENST00000627044); non_coding_transcript_variant(ENST00000627044)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000487865, ENST00000612570, ENST00000620924, ENST00000218652)
PolyPhen Annotation possibly_damaging; probably_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000612570, ENST00000620924, ENST00000218652); probably_damaging(ENST00000487865)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Nievergelt, C. M.,2015 PTSD In subjects of European: P-value=1.4E-06. In subjects of European: P-value=1.4E-06. It met the threshold for suggestive evidence of association ...... It met the threshold for suggestive evidence of association (P-value<5E-06). More... Trend
G*E study related association result (count: 1)
Reference Phenotype Environment Statistical Values Author Comments Marker's Category
Nievergelt, C. M.,2015 PTSD Childhood trauma Gene and childhood trauma interaction: P-value<0.05 in any s...... Gene and childhood trauma interaction: P-value<0.05 in any subjects. More... It showed a non-significant interaction effect with childhoo...... It showed a non-significant interaction effect with childhood trauma on PTSD. More... Non-significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
LINC01080 long intergenic non-protein coding RNA 1080 13q31.1 1(0/0/1)

SNPs in LD with rs9545302 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx