PTSDgene database

SNP Report

Basic Info
Name rs9306235 dbSNP Ensembl
Location 22:19967634 - 19967634(+)
Variant Seq A,T
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.028155
Annotation downstream_gene_variant; 3_prime_UTR_variant; intron_variant; NMD_transcript_variant
Variant Effect downstream_gene_variant(ENST00000406522, ENST00000495096, ENST00000493893, ENST00000403184, ENST00000467943, ENST00000406259, ENST00000585066, ENST00000401994, ENST00000263207); 3_prime_UTR_variant(ENST00000428707); intron_variant(ENST00000449653, ENST00000207636, ENST00000412786, ENST00000407537, ENST00000406520, ENST00000361682, ENST00000403710); NMD_transcript_variant(ENST00000207636)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000401994, ENST00000406259, ENST00000406522, ENST00000263207)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000401994, ENST00000406259, ENST00000406522, ENST00000263207)
rSNP? No Link in rVarBase
Related Regulatory Elements N.A.
Chromatin State N.A.
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Wolf, E. J.,2014 Dissociative symptom severity Association with dissociation: P-value= .04, gene-wide perm...... Association with dissociation: P-value= .04, gene-wide permutation testing: P-value= .42. More... It showed a nominally significant association that did not w...... It showed a nominally significant association that did not withstand gene-wide permutation testing. More... Non-significant

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome 22q11.21 Mapped by Literature SNP, Mapped by LD-proxy
COMT catechol-O-methyltransferase 22q11.21 21(9/12/0)

SNPs in LD with rs9306235 (count: 1)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
FBLL1 No Adipose Subcutaneous cis GTEx