PTSDgene database

SNP Report

Basic Info
Name rs9306234 dbSNP Ensembl
Location 22:19965665 - 19965665(+)
Variant Seq C
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.346246
Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect downstream_gene_variant(ENST00000263207, ENST00000493893, ENST00000495096, ENST00000403184, ENST00000467943, ENST00000585066); intron_variant(ENST00000407537, ENST00000412786, ENST00000207636, ENST00000406520, ENST00000449653, ENST00000403710, ENST00000428707, ENST00000361682); NMD_transcript_variant(ENST00000207636)
SIFT Annotation deleterious_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000207636)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000207636)
rSNP? No Link in rVarBase
Related Regulatory Elements N.A.
Chromatin State N.A.
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome 22q11.21 Mapped by Literature SNP, Mapped by LD-proxy
COMT catechol-O-methyltransferase 22q11.21 21(9/12/0)

SNPs in LD with rs9306234 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
FBLL1 No Adipose Subcutaneous cis GTEx