SNP Report
Basic Info
| Name | rs853183 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 5:143261937 - 143261937(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | A | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.398562 | ||
| Annotation | downstream_gene_variant; 3_prime_UTR_variant; intron_variant | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000378004, ENST00000418236, ENST00000443674, ENST00000274498) | ||
| PolyPhen Annotation | benign; possibly_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000378004, ENST00000418236); possibly_damaging(ENST00000443674, ENST00000274498) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Weak transcription;Enhancers | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| NR3C1 | nuclear receptor subfamily 3 group C member 1 | 5q31-q32 | 6(2/4/0) |
SNPs in LD with rs853183 (count: 0)
SNP related eQTL (count: 1)