PTSDgene database

SNP Report

Basic Info
Name rs852980 dbSNP Ensembl
Location 5:143321291 - 143321291(+)
Variant Seq C
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.40016
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000394466, ENST00000231509, ENST00000415690, ENST00000504336, ENST00000424646, ENST00000503201, ENST00000343796, ENST00000394464, ENST00000504572); non_coding_transcript_variant(ENST00000504336)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000504572, ENST00000394466, ENST00000394464, ENST00000343796, ENST00000424646, ENST00000231509, ENST00000415690, ENST00000503201)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000504572, ENST00000394466, ENST00000394464, ENST00000343796, ENST00000424646, ENST00000231509, ENST00000415690, ENST00000503201)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription;Enhancers;Genic enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
NR3C1 nuclear receptor subfamily 3 group C member 1 5q31-q32 6(2/4/0)

SNPs in LD with rs852980 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx