PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs852980 dbSNP Ensembl
Location	5:143321291 - 143321291(+)
Variant Seq	C
Ancestral Allele	G
Ref Seq	G
Minor Allele Frequence	0.40016
Annotation	intron_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000394466, ENST00000231509, ENST00000415690, ENST00000504336, ENST00000424646, ENST00000503201, ENST00000343796, ENST00000394464, ENST00000504572); non_coding_transcript_variant(ENST00000504336)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000504572, ENST00000394466, ENST00000394464, ENST00000343796, ENST00000424646, ENST00000231509, ENST00000415690, ENST00000503201)
PolyPhen Annotation	probably_damaging
PolyPhen Variant Effect	probably_damaging(ENST00000504572, ENST00000394466, ENST00000394464, ENST00000343796, ENST00000424646, ENST00000231509, ENST00000415690, ENST00000503201)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Strong transcription;Enhancers;Genic enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
NR3C1	nuclear receptor subfamily 3 group C member 1	5q31-q32	6(2/4/0)

SNPs in LD with rs852980 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1-IT1	Yes	Adipose Subcutaneous	cis	GTEx