SNP Report
Basic Info
| Name | rs845820 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 12:117250894 - 117250894(+) | ||
| Variant Seq | G | ||
| Ancestral Allele | A | ||
| Ref Seq | A | ||
| Minor Allele Frequence | 0.368011 | ||
| Annotation | upstream_gene_variant; intron_variant | ||
| Variant Effect | upstream_gene_variant(ENST00000548625); intron_variant(ENST00000618760, ENST00000317775, ENST00000344089, ENST00000338101) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000317775, ENST00000344089, ENST00000618760, ENST00000338101) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000317775, ENST00000344089, ENST00000618760, ENST00000338101) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Strong transcription;Weak transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| TCEB1P32 | transcription elongation factor B (SIII), polypeptide 1 pseudogene 32 | 12q24.22 | Mapped by Literature SNP, Mapped by LD-proxy, rSNP target |
| NOS1 | nitric oxide synthase 1 | 12q24.22 | 1(1/0/0) |
SNPs in LD with rs845820 (count: 0)
SNP related eQTL (count: 1)