SNP Report
Basic Info
| Name | rs807060 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 1:25914964 - 25914964(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.464856 | ||
| Annotation | downstream_gene_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000584862) | ||
| SIFT Annotation | deleterious; tolerated | ||
| SIFT Variant Effect | deleterious(ENST00000446334, ENST00000426559); tolerated(ENST00000399728, ENST00000455785, ENST00000374291, ENST00000357865) | ||
| PolyPhen Annotation | benign; possibly_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000399728, ENST00000455785, ENST00000374291, ENST00000357865, ENST00000446334); possibly_damaging(ENST00000426559) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Weak transcription;Enhancers | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| MIR3917 | microRNA 3917 | 1 | rSNP target |
| PAFAH2 | platelet-activating factor acetylhydrolase 2 | 1p34.3 | Mapped by LD-proxy, rSNP target |
SNPs in LD with rs807060 (count: 0)
SNP related eQTL (count: 1)