PTSDgene database

SNP Report

Basic Info
Name rs7933505 dbSNP Ensembl
Location 11:18024440 - 18024440(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.289736
Annotation upstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect upstream_gene_variant(ENST00000525523, ENST00000525406); intron_variant(ENST00000417164, ENST00000250018); NMD_transcript_variant(ENST00000417164)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000250018)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000250018)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target
TPH1 tryptophan hydroxylase 1 11p15.3-p14 5(1/4/0)

SNPs in LD with rs7933505 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx