PTSDgene database

SNP Report

Basic Info
Name rs7786849 dbSNP Ensembl
Location 7:31124112 - 31124112(+)
Variant Seq T
Ancestral Allele T
Ref Seq C
Minor Allele Frequence 0.356629
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000438721)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000409363, ENST00000409489, ENST00000304166, ENST00000614107, ENST00000396211)
PolyPhen Annotation benign; possibly_damaging; probably_damaging
PolyPhen Variant Effect benign(ENST00000304166); possibly_damaging(ENST00000614107, ENST00000396211); probably_damaging(ENST00000409363, ENST00000409489)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GHRHR growth hormone releasing hormone receptor 7p14 rSNP target

SNPs in LD with rs7786849 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx