SNP Report
Name | rs7786118 dbSNP Ensembl | ||
---|---|---|---|
Location | 7:31099534 - 31099534(+) | ||
Variant Seq | T | ||
Ancestral Allele | C | ||
Ref Seq | C | ||
Minor Allele Frequence | 0.129992 | ||
Annotation | intron_variant | ||
Variant Effect | intron_variant(ENST00000304166, ENST00000436116, ENST00000396211, ENST00000409363, ENST00000614107, ENST00000409489) | ||
SIFT Annotation | deleterious_-_low_confidence; tolerated_-_low_confidence | ||
SIFT Variant Effect | deleterious_-_low_confidence(ENST00000409489); tolerated_-_low_confidence(ENST00000614107, ENST00000396211) | ||
PolyPhen Annotation | possibly_damaging | ||
PolyPhen Variant Effect | possibly_damaging(ENST00000614107, ENST00000409489, ENST00000396211) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription;Strong transcription | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.