PTSDgene database

SNP Report

Basic Info
Name rs7728378 dbSNP Ensembl
Location 5:76963525 - 76963525(+)
Variant Seq C
Ancestral Allele C
Ref Seq T
Minor Allele Frequence 0.453674
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000512446, ENST00000506501); intron_variant(ENST00000274368, ENST00000503763, ENST00000514258); non_coding_transcript_variant(ENST00000503763, ENST00000514258)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000274368)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000274368)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CRHBP corticotropin releasing hormone binding protein 5q13.3 1(1/0/0)

SNPs in LD with rs7728378 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx