PTSDgene database

SNP Report

Basic Info
Name rs7684329 dbSNP Ensembl
Location 4:33745802 - 33745802(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.202476
Annotation upstream_gene_variant
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000621961); tolerated(ENST00000511884)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000511884, ENST00000621961)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Active TSS
No. of Marker's Association Results 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Almli, L. M.,2015 PTSD Symptoms as measured by the quantitave CAPS scores In (SBPBC cohort) discovery stage: (sex and top three princ...... In (SBPBC cohort) discovery stage: (sex and top three principal components as covariates) B (SE)=27.04 (5.38), P-value=1.47E-06. More... None None Trend


SNP related genes (count: 0)

SNPs in LD with rs7684329 (count: 96)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 2)

LD-proxies (count: 94)


SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx