PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs740601 dbSNP Ensembl
Location	22:19963240 - 19963240(+)
Variant Seq	G
Ancestral Allele	G
Ref Seq	T
Minor Allele Frequence	0.36861
Annotation	downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000467943); upstream_gene_variant(ENST00000585066, ENST00000493893, ENST00000428707); intron_variant(ENST00000407537, ENST00000449653, ENST00000403184, ENST00000406520, ENST00000207636, ENST00000412786, ENST00000403710, ENST00000361682); NMD_transcript_variant(ENST00000207636)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000412786, ENST00000403184, ENST00000449653, ENST00000406520, ENST00000361682, ENST00000207636, ENST00000407537, ENST00000403710)
PolyPhen Annotation	possibly_damaging; probably_damaging
PolyPhen Variant Effect	possibly_damaging(ENST00000207636); probably_damaging(ENST00000412786, ENST00000403184, ENST00000449653, ENST00000406520, ENST00000361682, ENST00000407537, ENST00000403710)
rSNP?	No Link in rVarBase
Related Regulatory Elements	N.A.
Chromatin State	N.A.
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
COMT	catechol-O-methyltransferase	22q11.21	21(9/12/0)

SNPs in LD with rs740601 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
FBLL1	No	Adipose Subcutaneous	cis	GTEx