PTSDgene database

SNP Report

Basic Info
Name rs740601 dbSNP Ensembl
Location 22:19963240 - 19963240(+)
Variant Seq G
Ancestral Allele G
Ref Seq T
Minor Allele Frequence 0.36861
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect downstream_gene_variant(ENST00000467943); upstream_gene_variant(ENST00000585066, ENST00000493893, ENST00000428707); intron_variant(ENST00000407537, ENST00000449653, ENST00000403184, ENST00000406520, ENST00000207636, ENST00000412786, ENST00000403710, ENST00000361682); NMD_transcript_variant(ENST00000207636)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000412786, ENST00000403184, ENST00000449653, ENST00000406520, ENST00000361682, ENST00000207636, ENST00000407537, ENST00000403710)
PolyPhen Annotation possibly_damaging; probably_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000207636); probably_damaging(ENST00000412786, ENST00000403184, ENST00000449653, ENST00000406520, ENST00000361682, ENST00000407537, ENST00000403710)
rSNP? No Link in rVarBase
Related Regulatory Elements N.A.
Chromatin State N.A.
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
COMT catechol-O-methyltransferase 22q11.21 21(9/12/0)

SNPs in LD with rs740601 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
FBLL1 No Adipose Subcutaneous cis GTEx