PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs72475805 dbSNP Ensembl
Location	8:27501613 - 27501613(+)
Variant Seq	A
Ancestral Allele	G
Ref Seq	G
Minor Allele Frequence	0.0123802
Annotation	upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect	upstream_gene_variant(ENST00000521924); intron_variant(ENST00000521400, ENST00000521780, ENST00000380476, ENST00000523827, ENST00000517536, ENST00000518379, ENST00000520623, ENST00000518328, ENST00000521684, ENST00000520666); non_coding_transcript_variant(ENST00000523827, ENST00000520623, ENST00000520666)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000380476, ENST00000518379, ENST00000521400, ENST00000521780, ENST00000521684, ENST00000518328)
PolyPhen Annotation	probably_damaging; possibly_damaging
PolyPhen Variant Effect	probably_damaging(ENST00000518379, ENST00000521684); possibly_damaging(ENST00000380476, ENST00000521400, ENST00000521780, ENST00000518328)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region;lncRNA
Chromatin State	Weak transcription;Strong transcription;ZNF genes & repeats
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
EPHX2	epoxide hydrolase 2	8p21	Mapped by LD-proxy, rSNP target

SNPs in LD with rs72475805 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-259G18.3	No	Adipose Subcutaneous	cis	GTEx