PTSDgene database

SNP Report

Basic Info
Name rs6582071 dbSNP Ensembl
Location 12:71936332 - 71936332(+)
Variant Seq A
Ancestral Allele A
Ref Seq G
Minor Allele Frequence 0.400559
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000333850, ENST00000546576)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000333850)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000333850)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
RAB21 RAB21, member RAS oncogene family 12q21.1 rSNP target
TPH2 tryptophan hydroxylase 2 12q15 10(3/7/0)

SNPs in LD with rs6582071 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx