PTSDgene database

SNP Report

Basic Info
Name rs654734 dbSNP Ensembl
Location 11:18043392 - 18043392(+)
Variant Seq T
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.304313
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000250018, ENST00000417164, ENST00000528338)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000417164, ENST00000528338, ENST00000250018)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000417164, ENST00000528338, ENST00000250018)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
TPH1 tryptophan hydroxylase 1 11p15.3-p14 5(1/4/0)

SNPs in LD with rs654734 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx