PTSDgene database

SNP Report

Basic Info
Name rs652458 dbSNP Ensembl
Location 11:18042860 - 18042860(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.354832
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000417164, ENST00000250018, ENST00000528338)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000528338, ENST00000250018, ENST00000417164)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000528338, ENST00000250018); possibly_damaging(ENST00000417164)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
TPH1 tryptophan hydroxylase 1 11p15.3-p14 5(1/4/0)

SNPs in LD with rs652458 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx