PTSDgene database

SNP Report

Basic Info
Name rs6278 dbSNP Ensembl
Location 11:113410002 - 113410002(+)
Variant Seq A
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.204073
Annotation downstream_gene_variant; 3_prime_UTR_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000538967, ENST00000540600, ENST00000535984); 3_prime_UTR_variant(ENST00000542968, ENST00000346454, ENST00000362072, ENST00000544518); intron_variant(ENST00000546284); non_coding_transcript_variant(ENST00000546284)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000544518, ENST00000538967, ENST00000362072, ENST00000542968)
PolyPhen Annotation benign; probably_damaging; possibly_damaging
PolyPhen Variant Effect benign(ENST00000362072, ENST00000542968); probably_damaging(ENST00000538967); possibly_damaging(ENST00000544518)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD2 dopamine receptor D2 11q23.2 18(11/7/0)

SNPs in LD with rs6278 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx