PTSDgene database

SNP Report

Basic Info
Name rs62057069 dbSNP Ensembl
Location 17:45781699 - 45781699(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.0860623
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000398285, ENST00000582766, ENST00000619154, ENST00000293493, ENST00000314537, ENST00000347197, ENST00000339069, ENST00000352855, ENST00000577353); intron_variant(ENST00000634540, ENST00000587305); non_coding_transcript_variant(ENST00000587305)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000430334); tolerated(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780); possibly_damaging(ENST00000430334, ENST00000584420)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers;Bivalent Enhancer;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CRHR1 corticotropin releasing hormone receptor 1 17q21.31 12(6/6/0)

SNPs in LD with rs62057069 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx