PTSDgene database

SNP Report

Basic Info
Name rs62056849 dbSNP Ensembl
Location 17:45915097 - 45915097(+)
Variant Seq A,C
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.0860623
Annotation upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000574252); intron_variant(ENST00000351559, ENST00000344290, ENST00000334239, ENST00000571311, ENST00000262410, ENST00000340799, ENST00000570299, ENST00000446361, ENST00000535772); NMD_transcript_variant(ENST00000571311); non_coding_transcript_variant(ENST00000570299)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000329196)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000329196)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Weak transcription;Enhancers;Genic enhancers;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MAPT microtubule associated protein tau 17q21 Mapped by LD-proxy, rSNP target

SNPs in LD with rs62056849 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP1-59M18.2 No Adipose Subcutaneous cis GTEx