PTSDgene database

SNP Report

Basic Info
Name rs62056842 dbSNP Ensembl
Location 17:45914149 - 45914149(+)
Variant Seq G
Ancestral Allele T
Ref Seq T
Annotation upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000574252); intron_variant(ENST00000262410, ENST00000535772, ENST00000344290, ENST00000571311, ENST00000351559, ENST00000570299, ENST00000340799, ENST00000446361, ENST00000334239); NMD_transcript_variant(ENST00000571311); non_coding_transcript_variant(ENST00000570299)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000329196)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000329196)
rSNP? No Link in rVarBase
Related Regulatory Elements N.A.
Chromatin State N.A.
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MAPT microtubule associated protein tau 17q21 Mapped by LD-proxy, rSNP target

SNPs in LD with rs62056842 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP1-59M18.2 No Adipose Subcutaneous cis GTEx