SNP Report

Basic Info
Name |
rs62056793
dbSNP
Ensembl
|
Location |
17:45899652 - 45899652(+) |
Variant Seq |
G |
Ancestral Allele |
A |
Ref Seq |
A |
Minor Allele Frequence |
0.0860623 |
Annotation |
downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
|
Variant Effect |
downstream_gene_variant(ENST00000624111); upstream_gene_variant(ENST00000579244, ENST00000634876, ENST00000579599); intron_variant(ENST00000344290, ENST00000340799, ENST00000570299, ENST00000446361, ENST00000351559, ENST00000262410, ENST00000334239, ENST00000535772, ENST00000571311); NMD_transcript_variant(ENST00000571311); non_coding_transcript_variant(ENST00000570299)
|
SIFT Annotation |
tolerated
|
SIFT Variant Effect |
tolerated(ENST00000329196)
|
PolyPhen Annotation |
benign
|
PolyPhen Variant Effect |
benign(ENST00000329196)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
TF binding region;Chromatin interactive region
|
Chromatin State |
Enhancers;Weak transcription
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 3)

SNPs in LD with rs62056793 (count: 0)

SNP related eQTL (count: 1)