PTSDgene database

SNP Report

Basic Info
Name rs62056784 dbSNP Ensembl
Location 17:45897523 - 45897523(+)
Variant Seq G
Ancestral Allele G
Ref Seq C
Minor Allele Frequence 0.0860623
Annotation non_coding_transcript_exon_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect non_coding_transcript_exon_variant(ENST00000624111); upstream_gene_variant(ENST00000579599, ENST00000634876, ENST00000579244); intron_variant(ENST00000571311, ENST00000262410, ENST00000344290, ENST00000570299, ENST00000446361, ENST00000334239, ENST00000535772, ENST00000351559, ENST00000340799); NMD_transcript_variant(ENST00000571311); non_coding_transcript_variant(ENST00000624111, ENST00000570299)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000329196)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000329196)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;CpG island;lncRNA
Chromatin State Bivalent/Poised TSS;Flanking Bivalent TSS/Enh;Bivalent Enhancer;Enhancers;Active TSS;Flanking Active TSS;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MAPT-IT1 MAPT intronic transcript 1 17q21.31 Mapped by LD-proxy
MAPT-AS1 MAPT antisense RNA 1 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
MAPT microtubule associated protein tau 17q21 Mapped by LD-proxy, rSNP target

SNPs in LD with rs62056784 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx