PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs62056760 dbSNP Ensembl
Location	17:45891206 - 45891206(+)
Variant Seq	A
Ancestral Allele	G
Ref Seq	G
Minor Allele Frequence	0.0860623
Annotation	upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect	upstream_gene_variant(ENST00000624111, ENST00000571311, ENST00000570299, ENST00000344290, ENST00000446361, ENST00000334239, ENST00000351559, ENST00000340799, ENST00000535772, ENST00000262410); intron_variant(ENST00000634876, ENST00000579244, ENST00000579599); non_coding_transcript_variant(ENST00000634876, ENST00000579244, ENST00000579599)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000329196)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000329196)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Weak transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
MAPT-IT1	MAPT intronic transcript 1	17q21.31	Mapped by LD-proxy
MAPT-AS1	MAPT antisense RNA 1	17q21.31	Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
MAPT	microtubule associated protein tau	17q21	Mapped by LD-proxy, rSNP target

SNPs in LD with rs62056760 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
DND1P1	No	Adipose Subcutaneous	cis	GTEx