PTSDgene database

SNP Report

Basic Info
Name rs62054802 dbSNP Ensembl
Location 17:45837232 - 45837232(+)
Variant Seq C
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.0860623
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000583888, ENST00000581479, ENST00000535778, ENST00000634540, ENST00000352855, ENST00000339069, ENST00000398285, ENST00000293493, ENST00000619154, ENST00000347197, ENST00000577353, ENST00000580876, ENST00000314537); intron_variant(ENST00000634876); non_coding_transcript_variant(ENST00000634876)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000329196)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000329196)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Enhancers;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CRHR1 corticotropin releasing hormone receptor 1 17q21.31 12(6/6/0)
SPPL2C signal peptide peptidase like 2C 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
MAPT-AS1 MAPT antisense RNA 1 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs62054802 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx